Gunaratne, Preethi
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selected publications: Authorship 3293
selected publications: Authorship 3296
selected publications: Authorship 3295
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selected publications: Authorship 3297
selected publications: Authorship 3299
selected publications: Authorship 3300
selected publications: Authorship 3301
selected publications: Authorship 3302
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selected publications: Authorship 3307
selected publications: Authorship 3308
selected publications: Authorship 3310
selected publications: Authorship 3309
selected publications: Authorship 3311
selected publications: Authorship 3312
selected publications: Authorship 3313
selected publications: Authorship 3314
selected publications: Authorship 3315
selected publications: Authorship 3316
selected publications: Authorship 3317
selected publications: Authorship 3318
selected publications: Authorship 3319
selected publications: Authorship 3320
selected publications: Authorship 3321
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selected publications: Authorship 3325
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selected publications: Authorship 3340
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Kumar, Ashok
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Trivedi, Meghana
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Zhang, Ruiwen
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Biochemistry
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College of Pharmacy
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McConnell, Bradley
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Arizona State University (ASU)
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Zhao, Ming
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Authorship 3293
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Plasma microRNAs to Select Optimal Patients for Antibody Production from Anti-Addiction Vaccines.

Authorship 3294
type: Authorship
author rank in publication: 15
linked author: Gunaratne, Preethi
linked information resource: Interactions between ADGRF1 (GPR110) and extracellular matrix proteins govern its effects on tumorigenesis in HER2-positive breast cancer.

Authorship 3295
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Single-nucleus transcriptomic analysis reveals the regulatory circuitry of myofiber XBP1 during regenerative myogenesis.

Authorship 3296
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Transcriptomic and epigenomic signatures distinguish high- and low-risk endotypes for liver tumor development.

Authorship 3297
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: The IRE1a/XBP1 signaling axis drives myoblast fusion in adult skeletal muscle.

Authorship 3298
type: Authorship
author rank in publication: 9
linked author: Gunaratne, Preethi
linked information resource: ?1 integrins regulate cellular behaviour and cardiomyocyte organization during ventricular wall formation.

Authorship 3299
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Laminin Alpha 2 Enhances the Protective Effect of Exosomes on Human iPSC-Derived Cardiomyocytes in an In Vitro Ischemia-Reoxygenation Model.

Authorship 3300
type: Authorship
author rank in publication: 20
linked author: Gunaratne, Preethi
linked information resource: Comprehensive characterization of IFN? signaling in acute myeloid leukemia reveals prognostic and therapeutic strategies.

Authorship 3301
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Genome-wide p63-Target Gene Analyses Reveal TAp63/NRF2-Dependent Oxidative Stress Responses.

Authorship 3302
type: Authorship
author rank in publication: 8
linked author: Gunaratne, Preethi
linked information resource: Transfection of Unmodified MicroRNA Using Monolayer-Coated Au Nanoparticles as Gene-Delivery Vehicles.

Authorship 3303
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Fn14 promotes myoblast fusion during regenerative myogenesis.

Authorship 3304
type: Authorship
author rank in publication: 11
linked author: Gunaratne, Preethi
linked information resource: iPSC-based modeling of helicase deficiency reveals impaired cell proliferation and increased apoptosis after NK cell lineage commitment.

Authorship 3305
type: Authorship
author rank in publication: 17
linked author: Gunaratne, Preethi
linked information resource: Chimeric RNAs reveal putative neoantigen peptides for developing tumor vaccines for breast cancer.

Authorship 3306
type: Authorship
author rank in publication: 20
linked author: Gunaratne, Preethi
linked information resource: Inflammation induced by tumor-associated nerves promotes resistance to anti-PD-1 therapy in cancer patients and is targetable by interleukin-6 blockade.

Authorship 3307
type: Authorship
author rank in publication: 11
linked author: Gunaratne, Preethi
linked information resource: MicroRNA-mRNA networks are dysregulated in opioid use disorder postmortem brain: Further evidence for opioid-induced neurovascular alterations.

Authorship 3308
type: Authorship
author rank in publication: 9
linked author: Gunaratne, Preethi
linked information resource: Direct reprogramming of cardiomyocytes into cardiac Purkinje-like cells.

Authorship 3309
type: Authorship
author rank in publication: 10
linked author: Gunaratne, Preethi
linked information resource: Integrative metabolomics and transcriptomics analysis reveals novel therapeutic vulnerabilities in lung cancer.

Authorship 3310
type: Authorship
author rank in publication: 25
linked author: Gunaratne, Preethi
linked information resource: HepT1-derived murine models of high-risk hepatoblastoma display vascular invasion, metastasis, and circulating tumor cells.

Authorship 3311
type: Authorship
author rank in publication: 10
linked author: Gunaratne, Preethi
linked information resource: Curcumin Reduces Adipose Tissue Inflammation and Alters Gut Microbiota in Diet-Induced Obese Male Mice.

Authorship 3312
type: Authorship
author rank in publication: 14
linked author: Gunaratne, Preethi
linked information resource: Functional significance of gain-of-function H19 lncRNA in skeletal muscle differentiation and anti-obesity effects.

Authorship 3313
type: Authorship
author rank in publication: 22
linked author: Gunaratne, Preethi
linked information resource: A noncoding RNA modulator potentiates phenylalanine metabolism in mice.

Authorship 3314
type: Authorship
author rank in publication: 3
linked author: Gunaratne, Preethi
linked information resource: Co-delivery of novel bispecific and trispecific engagers by an amplicon vector augments the therapeutic effect of an HSV-based oncolytic virotherapy.

Authorship 3315
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: Functional and structural characterization of Hyp730, a highly conserved and dormancy-specific hypothetical membrane protein.

Authorship 3316
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: https://profilesrns.times.uh.edu/profile/250887

Authorship 3317
type: Authorship
author rank in publication: 13
linked author: Gunaratne, Preethi
linked information resource: Pan-cancer analysis reveals TAp63-regulated oncogenic lncRNAs that promote cancer progression through AKT activation.

Authorship 3318
type: Authorship
author rank in publication: 8
linked author: Gunaratne, Preethi
linked information resource: Role of microRNA 690 in Mediating Angiotensin II Effects on Inflammation and Endoplasmic Reticulum Stress.

Authorship 3319
type: Authorship
author rank in publication: 10
linked author: Gunaratne, Preethi
linked information resource: Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing.

Authorship 3320
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Wnt signaling regulates neural plate patterning in distinct temporal phases with dynamic transcriptional outputs.

Authorship 3321
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: https://profilesrns.times.uh.edu/profile/250892

Authorship 3322
type: Authorship
author rank in publication: 10
linked author: Gunaratne, Preethi
linked information resource: TAp63-Regulated miRNAs Suppress Cutaneous Squamous Cell Carcinoma through Inhibition of a Network of Cell-Cycle Genes.

Authorship 3323
type: Authorship
author rank in publication: 9
linked author: Gunaratne, Preethi
linked information resource: MicroRNA-509-3p inhibits cellular migration, invasion, and proliferation, and sensitizes osteosarcoma to cisplatin.

Authorship 3324
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Conversion of human cardiac progenitor cells into cardiac pacemaker-like cells.

Authorship 3325
type: Authorship
author rank in publication: 9
linked author: Gunaratne, Preethi
linked information resource: A Universal Stress Protein That Controls Bacterial Stress Survival in Micrococcus luteus.

Authorship 3326
type: Authorship
author rank in publication: 16
linked author: Gunaratne, Preethi
linked information resource: Recent Developments and Therapeutic Strategies against Hepatocellular Carcinoma.

Authorship 3327
type: Authorship
author rank in publication: 26
linked author: Gunaratne, Preethi
linked information resource: Oncogenic lncRNA downregulates cancer cell antigen presentation and intrinsic tumor suppression.

Authorship 3328
type: Authorship
author rank in publication: 11
linked author: Gunaratne, Preethi
linked information resource: Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.

Authorship 3329
type: Authorship
author rank in publication: 1
linked author: Gunaratne, Preethi
linked information resource: Activating p53 family member TAp63: A novel therapeutic strategy for targeting p53-altered tumors.

Authorship 3330
type: Authorship
author rank in publication: 8
linked author: Gunaratne, Preethi
linked information resource: The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders.

Authorship 3331
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Quaternary Ammonium-Terminated Films Formed from Mixed Bidentate Adsorbates Provide a High-Capacity Platform for Oligonucleotide Delivery.

Authorship 3332
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Transcriptomic and microRNA analyses of gene networks regulated by eicosapentaenoic acid in brown adipose tissue of diet-induced obese mice.

Authorship 3333
type: Authorship
author rank in publication: 20
linked author: Gunaratne, Preethi
linked information resource: CD56 Expression Marks Human Group 2 Innate Lymphoid Cell Divergence from a Shared NK Cell and Group 3 Innate Lymphoid Cell Developmental Pathway.

Authorship 3334
type: Authorship
author rank in publication: 17
linked author: Gunaratne, Preethi
linked information resource: A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers.

Authorship 3335
type: Authorship
author rank in publication: 12
linked author: Gunaratne, Preethi
linked information resource: Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context.

Authorship 3336
type: Authorship
author rank in publication: 40
linked author: Gunaratne, Preethi
linked information resource: Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.

Authorship 3337
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: An integrative transcriptomic approach to identify depot differences in genes and microRNAs in adipose tissues from high fat fed mice.

Authorship 3338
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Distinct TP63 Isoform-Driven Transcriptional Signatures Predict Tumor Progression and Clinical Outcomes.

Authorship 3339
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Ronin Governs Early Heart Development by Controlling Core Gene Expression Programs.

Authorship 3340
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Protective properties of n-3 fatty acids and implications in obesity-associated breast cancer.

Authorship 3341
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: DNA Loading and Release Using Custom-Tailored Poly(l-lysine) Surfaces.

Authorship 3342
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: Regulation of miRNA-29c and its downstream pathways in preneoplastic progression of triple-negative breast cancer.

Authorship 3343
type: Authorship
author rank in publication: 9
linked author: Gunaratne, Preethi
linked information resource: Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour.

Authorship 3344
type: Authorship
author rank in publication: 26
linked author: Gunaratne, Preethi
linked information resource: Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates.

Authorship 3345
type: Authorship
author rank in publication: 14
linked author: Gunaratne, Preethi
linked information resource: Mesp1 Marked Cardiac Progenitor Cells Repair Infarcted Mouse Hearts.

Authorship 3346
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: PPAR? agonists promote differentiation of cancer stem cells by restraining YAP transcriptional activity.

Authorship 3347
type: Authorship
author rank in publication: 12
linked author: Gunaratne, Preethi
linked information resource: miR-322/-503 cluster is expressed in the earliest cardiac progenitor cells and drives cardiomyocyte specification.

Authorship 3348
type: Authorship
author rank in publication: 17
linked author: Gunaratne, Preethi
linked information resource: ?Np63/DGCR8-Dependent MicroRNAs Mediate Therapeutic Efficacy of HDAC Inhibitors in Cancer.

Authorship 3349
type: Authorship
author rank in publication: 15
linked author: Gunaratne, Preethi
linked information resource: MYC-Driven Neuroblastomas Are Addicted to a Telomerase-Independent Function of Dyskerin.

Authorship 3350
type: Authorship
author rank in publication: 28
linked author: Gunaratne, Preethi
linked information resource: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.

Authorship 3351
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Transmembrane adaptor protein PAG1 is a novel tumor suppressor in neuroblastoma.

Authorship 3352
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: Identification of potential glucocorticoid receptor therapeutic targets in multiple myeloma.

Authorship 3353
type: Authorship
author rank in publication: 11
linked author: Gunaratne, Preethi
linked information resource: Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1.

Authorship 3354
type: Authorship
author rank in publication: 7
linked author: Gunaratne, Preethi
linked information resource: Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.

Authorship 3355
type: Authorship
author rank in publication: 6
linked author: Gunaratne, Preethi
linked information resource: Annexin A1 Preferentially Predicts Poor Prognosis of Basal-Like Breast Cancer Patients by Activating mTOR-S6 Signaling.

Authorship 3356
type: Authorship
author rank in publication: 17
linked author: Gunaratne, Preethi
linked information resource: IAPP-driven metabolic reprogramming induces regression of p53-deficient tumours in vivo.

Authorship 3357
type: Authorship
author rank in publication: 4
linked author: Gunaratne, Preethi
linked information resource: siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster.

Authorship 3358
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Functional analysis of miR-34c as a putative tumor suppressor in high-grade serous ovarian cancer.

Authorship 3359
type: Authorship
author rank in publication: 15
linked author: Gunaratne, Preethi
linked information resource: The somatic genomic landscape of chromophobe renal cell carcinoma.

Authorship 3360
type: Authorship
author rank in publication: 3
linked author: Gunaratne, Preethi
linked information resource: Identification of p38? as a therapeutic target for the treatment of S?zary syndrome.

Authorship 3361
type: Authorship
author rank in publication: 26
linked author: Gunaratne, Preethi
linked information resource: PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.

Authorship 3362
type: Authorship
author rank in publication: 17
linked author: Gunaratne, Preethi
linked information resource: Large conserved domains of low DNA methylation maintained by Dnmt3a.

Authorship 3363
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: Chromatin changes in dicer-deficient mouse embryonic stem cells in response to retinoic acid induced differentiation.

Authorship 3364
type: Authorship
author rank in publication: 4
linked author: Gunaratne, Preethi
linked information resource: A gold nanoparticle platform for the delivery of functional microRNAs into cancer cells.

Authorship 3365
type: Authorship
author rank in publication: 1
linked author: Gunaratne, Preethi
linked information resource: miRNA data analysis: next-gen sequencing.

Authorship 3366
type: Authorship
author rank in publication: 5
linked author: Gunaratne, Preethi
linked information resource: miRNA regulatory circuits in ES cells differentiation: a chemical kinetics modeling approach.

Authorship 3367
type: Authorship
author rank in publication: 1
linked author: Gunaratne, Preethi
linked information resource: Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain.

Authorship 3368
type: Authorship
author rank in publication: 2
linked author: Gunaratne, Preethi
linked information resource: Using effective subnetworks to predict selected properties of gene networks.

Authorship 3369
type: Authorship
author rank in publication: 1
linked author: Gunaratne, Preethi
linked information resource: Large-scale integration of MicroRNA and gene expression data for identification of enriched microRNA-mRNA associations in biological systems.

Authorship 3370
type: Authorship
author rank in publication: 2
linked author: Gunaratne, Preethi
linked information resource: A theory for the arrangement of sensory organs in Drosophila.

Authorship 3371
type: Authorship
author rank in publication: 1
linked author: Gunaratne, Preethi
linked information resource: Embryonic stem cell microRNAs: defining factors in induced pluripotent (iPS) and cancer (CSC) stem cells?

Authorship 3372
type: Authorship
author rank in publication: 19
linked author: Gunaratne, Preethi
linked information resource: Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes.

Comprehensive characterization of IFN? signaling in acute myeloid leukemia reveals prognostic and therapeutic strategies.
PubMed Identifier: 38418901
author list: Wang B, Reville PK, Yassouf MY, Jelloul FZ, Ly C, Desai PN, Wang Z, Borges P, Veletic I, Dasdemir E, Burks JK, Tang G, Guo S, Garza AI, Nasnas C, Vaughn NR, Baran N, Deng Q, Matthews J, Gunaratne PH, Antunes DA, Ekmekcioglu S, Sasaki K, Garcia MB, Cuglievan B, Hao D, Daver N, Green MR, Konopleva M, Futreal A, Post SM, Abbas HA
published in: Nature communications
information resource reference: Comprehensive characterization of IFN? signaling in acute myeloid leukemia reveals prognostic and therapeutic strategies. Nat Commun. 2024 Feb 28; 15(1):1821.
journal title abbreviation: Nat Commun
publication date: 2024-02-28T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Interactions between ADGRF1 (GPR110) and extracellular matrix proteins govern its effects on tumorigenesis in HER2-positive breast cancer.
PubMed Identifier: 39965212
author list: Abdulkareem NM, Bhat R, Castillo M, Jung SY, Vasaikar S, Nanda S, Ruiz A, Shea M, Cao W, Veeraraghavan J, Kim HY, Bawa-Khalfe T, Hussain T, Liu X, Gunaratne P, Schiff R, Trivedi MV
published in: British journal of pharmacology
information resource reference: Interactions between ADGRF1 (GPR110) and extracellular matrix proteins govern its effects on tumorigenesis in HER2-positive breast cancer. Br J Pharmacol. 2025 Feb 18.
journal title abbreviation: Br J Pharmacol
publication date: 2025-02-18T00:00:00
year: 2025
type: Academic Article
type: Article
type: Document
type: Information Resource

Plasma microRNAs to Select Optimal Patients for Antibody Production from Anti-Addiction Vaccines.
PubMed Identifier: 40006728
author list: Kosten TR, Koirala A, Nielsen DA, Domingo CB, Thomas YT, Gunaratne PH, Coarfa C
published in: Vaccines
information resource reference: Plasma microRNAs to Select Optimal Patients for Antibody Production from Anti-Addiction Vaccines. Vaccines (Basel). 2025 Feb 13; 13(2).
journal title abbreviation: Vaccines (Basel)
publication date: 2025-02-13T00:00:00
year: 2025
type: Academic Article
type: Article
type: Document
type: Information Resource

Single-nucleus transcriptomic analysis reveals the regulatory circuitry of myofiber XBP1 during regenerative myogenesis.
PubMed Identifier: 39650729
author list: Joshi AS, Castillo MB, Tomaz da Silva M, Vuong AT, Gunaratne PH, Darabi R, Liu Y, Kumar A
published in: iScience
information resource reference: Single-nucleus transcriptomic analysis reveals the regulatory circuitry of myofiber XBP1 during regenerative myogenesis. iScience. 2024 Dec 20; 27(12):111372.
journal title abbreviation: iScience
publication date: 2024-11-12T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Transcriptomic and epigenomic signatures distinguish high- and low-risk endotypes for liver tumor development.
PubMed Identifier: 39588573
author list: Grimm SL, Talley T, Jangid RK, Koirala A, Castillo MB, Gunaratne PH, Coarfa C, Walker CL
published in: Environmental and molecular mutagenesis
information resource reference: Transcriptomic and epigenomic signatures distinguish high- and low-risk endotypes for liver tumor development. Environ Mol Mutagen. 2024 Nov; 65(9):351-359.
journal title abbreviation: Environ Mol Mutagen
publication date: 2024-11-26T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

The IRE1a/XBP1 signaling axis drives myoblast fusion in adult skeletal muscle.
PubMed Identifier: 38982191
author list: Joshi AS, Tomaz da Silva M, Roy A, Koike TE, Wu M, Castillo MB, Gunaratne PH, Liu Y, Iwawaki T, Kumar A
published in: EMBO reports
information resource reference: The IRE1a/XBP1 signaling axis drives myoblast fusion in adult skeletal muscle. EMBO Rep. 2024 Aug; 25(8):3627-3650.
journal title abbreviation: EMBO Rep
publication date: 2024-07-09T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

?1 integrins regulate cellular behaviour and cardiomyocyte organization during ventricular wall formation.
PubMed Identifier: 38794925
author list: Miao L, Lu Y, Nusrat A, Zhao L, Castillo M, Xiao Y, Guo H, Liu Y, Gunaratne P, Schwartz RJ, Burns AR, Kumar A, DiPersio CM, Wu M
published in: Cardiovascular research
information resource reference: ?1 integrins regulate cellular behaviour and cardiomyocyte organization during ventricular wall formation. Cardiovasc Res. 2024 Sep 21; 120(11):1279-1294.
journal title abbreviation: Cardiovasc Res
publication date: 2024-09-21T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Laminin Alpha 2 Enhances the Protective Effect of Exosomes on Human iPSC-Derived Cardiomyocytes in an In Vitro Ischemia-Reoxygenation Model.
PubMed Identifier: 38612582
author list: Mesquita FCP, King M, da Costa Lopez PL, Thevasagayampillai S, Gunaratne PH, Hochman-Mendez C
published in: International journal of molecular sciences
information resource reference: Laminin Alpha 2 Enhances the Protective Effect of Exosomes on Human iPSC-Derived Cardiomyocytes in an In Vitro Ischemia-Reoxygenation Model. Int J Mol Sci. 2024 Mar 28; 25(7).
journal title abbreviation: Int J Mol Sci
publication date: 2024-03-28T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Genome-wide p63-Target Gene Analyses Reveal TAp63/NRF2-Dependent Oxidative Stress Responses.
PubMed Identifier: 38165157
author list: Napoli M, Deshpande AA, Chakravarti D, Rajapakshe K, Gunaratne PH, Coarfa C, Flores ER
published in: Cancer research communications
information resource reference: Genome-wide p63-Target Gene Analyses Reveal TAp63/NRF2-Dependent Oxidative Stress Responses. Cancer Res Commun. 2024 02 01; 4(2):264-278.
journal title abbreviation: Cancer Res Commun
publication date: 2024-02-01T00:00:00
year: 2024
type: Academic Article
type: Article
type: Document
type: Information Resource

Transfection of Unmodified MicroRNA Using Monolayer-Coated Au Nanoparticles as Gene-Delivery Vehicles.
PubMed Identifier: 38133569
author list: Hoang J, Patil SL, Srinoi P, Liu T, Marquez MD, Khantamat O, Tuntiwechapikul W, Gunaratne PH, Lee TR
published in: ACS applied bio materials
information resource reference: Transfection of Unmodified MicroRNA Using Monolayer-Coated Au Nanoparticles as Gene-Delivery Vehicles. ACS Appl Bio Mater. 2024 01 15; 7(1):230-237.
journal title abbreviation: ACS Appl Bio Mater
publication date: 2023-12-22T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Fn14 promotes myoblast fusion during regenerative myogenesis.
PubMed Identifier: 37813488
author list: Tomaz da Silva M, Joshi AS, Castillo MB, Koike TE, Roy A, Gunaratne PH, Kumar A
published in: Life science alliance
information resource reference: Fn14 promotes myoblast fusion during regenerative myogenesis. Life Sci Alliance. 2023 12; 6(12).
journal title abbreviation: Life Sci Alliance
publication date: 2023-10-09T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

iPSC-based modeling of helicase deficiency reveals impaired cell proliferation and increased apoptosis after NK cell lineage commitment.
PubMed Identifier: 37808662
author list: Seo S, Patil SL, Ahn YO, Armetta J, Hegewisch-Solloa E, Castillo M, Guilz NC, Patel A, Corneo B, Borowiak M, Gunaratne P, Mace EM
published in: bioRxiv : the preprint server for biology
information resource reference: iPSC-based modeling of helicase deficiency reveals impaired cell proliferation and increased apoptosis after NK cell lineage commitment. bioRxiv. 2023 Sep 25.
journal title abbreviation: bioRxiv
publication date: 2023-09-25T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Chimeric RNAs reveal putative neoantigen peptides for developing tumor vaccines for breast cancer.
PubMed Identifier: 37744342
author list: Mistretta B, Rankothgedera S, Castillo M, Rao M, Holloway K, Bhardwaj A, El Noafal M, Albarracin C, El-Zein R, Rezaei H, Su X, Akbani R, Shao XM, Czerniecki BJ, Karchin R, Bedrosian I, Gunaratne PH
published in: Frontiers in immunology
information resource reference: Chimeric RNAs reveal putative neoantigen peptides for developing tumor vaccines for breast cancer. Front Immunol. 2023; 14:1188831.
journal title abbreviation: Front Immunol
publication date: 2023-09-06T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Inflammation induced by tumor-associated nerves promotes resistance to anti-PD-1 therapy in cancer patients and is targetable by interleukin-6 blockade.
PubMed Identifier: 37503252
author list: Baruch EN, Nagarajan P, Gleber-Netto FO, Rao X, Xie T, Akhter S, Adewale A, Shajedul I, Mattson BJ, Ferrarotto R, Wong MK, Davies MA, Jindal S, Basu S, Harwood C, Leigh I, Ajami N, Futreal A, Castillo M, Gunaratne P, Goepfert RP, Khushalani N, Wang J, Watowich S, Calin GA, Migden MR, Vermeer P, D'Silva N, Yaniv D, Burks JK, Gomez J, Dougherty PM, Tsai KY, Allison JP, Sharma P, Wargo J, Myers JN, Gross ND, Amit M
published in: Research square
information resource reference: Inflammation induced by tumor-associated nerves promotes resistance to anti-PD-1 therapy in cancer patients and is targetable by interleukin-6 blockade. Res Sq. 2023 Jul 18.
journal title abbreviation: Res Sq
publication date: 2023-07-18T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

MicroRNA-mRNA networks are dysregulated in opioid use disorder postmortem brain: Further evidence for opioid-induced neurovascular alterations.
PubMed Identifier: 36713930
author list: Grimm SL, Mendez EF, Stertz L, Meyer TD, Fries GR, Gandhi T, Kanchi R, Selvaraj S, Teixeira AL, Kosten TR, Gunaratne P, Coarfa C, Walss-Bass C
published in: Frontiers in psychiatry
information resource reference: MicroRNA-mRNA networks are dysregulated in opioid use disorder postmortem brain: Further evidence for opioid-induced neurovascular alterations. Front Psychiatry. 2022; 13:1025346.
journal title abbreviation: Front Psychiatry
publication date: 2023-01-12T00:00:00
year: 2023
type: Academic Article
type: Article
type: Document
type: Information Resource

Direct reprogramming of cardiomyocytes into cardiac Purkinje-like cells.
PubMed Identifier: 36388958
author list: Prodan N, Ershad F, Reyes-Alcaraz A, Li L, Mistretta B, Gonzalez L, Rao Z, Yu C, Gunaratne PH, Li N, Schwartz RJ, McConnell BK
published in: iScience
information resource reference: Direct reprogramming of cardiomyocytes into cardiac Purkinje-like cells. iScience. 2022 Nov 18; 25(11):105402.
journal title abbreviation: iScience
publication date: 2022-10-20T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Integrative metabolomics and transcriptomics analysis reveals novel therapeutic vulnerabilities in lung cancer.
PubMed Identifier: 35676822
author list: Thaiparambil J, Dong J, Grimm SL, Perera D, Ambati CSR, Putluri V, Robertson MJ, Patel TD, Mistretta B, Gunaratne PH, Kim MP, Yustein JT, Putluri N, Coarfa C, El-Zein R
published in: Cancer medicine
information resource reference: Integrative metabolomics and transcriptomics analysis reveals novel therapeutic vulnerabilities in lung cancer. Cancer Med. 2023 01; 12(1):584-596.
journal title abbreviation: Cancer Med
publication date: 2022-06-08T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

HepT1-derived murine models of high-risk hepatoblastoma display vascular invasion, metastasis, and circulating tumor cells.
PubMed Identifier: 35451474
author list: Woodfield SE, Mistretta BJ, Patel RH, Ibarra AM, Fisher KE, Sarabia SF, Gandhi I, Reuther J, Starosolski Z, Badachhape A, Epps J, Zorman B, Shah AP, Larson SR, Srivastava RK, Shi Y, Espinoza AF, Govindu SR, Whitlock RS, Holloway K, Roy A, Sumazin P, Ghaghada KB, Lopez-Terrada D, Gunaratne PH, Vasudevan SA
published in: Biology open
information resource reference: HepT1-derived murine models of high-risk hepatoblastoma display vascular invasion, metastasis, and circulating tumor cells. Biol Open. 2022 09 15; 11(9).
journal title abbreviation: Biol Open
publication date: 2022-09-12T00:00:00
year: 2022
type: Academic Article
type: Article
type: Document
type: Information Resource

Curcumin Reduces Adipose Tissue Inflammation and Alters Gut Microbiota in Diet-Induced Obese Male Mice.
PubMed Identifier: 34510720
author list: Islam T, Koboziev I, Albracht-Schulte K, Mistretta B, Scoggin S, Yosofvand M, Moussa H, Zabet-Moghaddam M, Ramalingam L, Gunaratne PH, Moustaid-Moussa N
published in: Molecular nutrition & food research
information resource reference: Curcumin Reduces Adipose Tissue Inflammation and Alters Gut Microbiota in Diet-Induced Obese Male Mice. Mol Nutr Food Res. 2021 11; 65(22):e2100274.
journal title abbreviation: Mol Nutr Food Res
publication date: 2021-10-07T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

Functional significance of gain-of-function H19 lncRNA in skeletal muscle differentiation and anti-obesity effects.
PubMed Identifier: 34454586
author list: Li Y, Zhang Y, Hu Q, Egranov SD, Xing Z, Zhang Z, Liang K, Ye Y, Pan Y, Chatterjee SS, Mistretta B, Nguyen TK, Hawke DH, Gunaratne PH, Hung MC, Han L, Yang L, Lin C
published in: Genome medicine
information resource reference: Functional significance of gain-of-function H19 lncRNA in skeletal muscle differentiation and anti-obesity effects. Genome Med. 2021 08 28; 13(1):137.
journal title abbreviation: Genome Med
publication date: 2021-08-28T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

A noncoding RNA modulator potentiates phenylalanine metabolism in mice.
PubMed Identifier: 34353949
author list: Li Y, Tan Z, Zhang Y, Zhang Z, Hu Q, Liang K, Jun Y, Ye Y, Li YC, Li C, Liao L, Xu J, Xing Z, Pan Y, Chatterjee SS, Nguyen TK, Hsiao H, Egranov SD, Putluri N, Coarfa C, Hawke DH, Gunaratne PH, Tsai KL, Han L, Hung MC, Calin GA, Namour F, Gu?ant JL, Muntau AC, Blau N, Sutton VR, Schiff M, Feillet F, Zhang S, Lin C, Yang L
published in: Science (New York, N.Y.)
information resource reference: A noncoding RNA modulator potentiates phenylalanine metabolism in mice. Science. 2021 08 06; 373(6555):662-673.
journal title abbreviation: Science
publication date: 2021-08-06T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

Co-delivery of novel bispecific and trispecific engagers by an amplicon vector augments the therapeutic effect of an HSV-based oncolytic virotherapy.
PubMed Identifier: 34230110
author list: Ravirala D, Mistretta B, Gunaratne PH, Pei G, Zhao Z, Zhang X
published in: Journal for immunotherapy of cancer
information resource reference: Co-delivery of novel bispecific and trispecific engagers by an amplicon vector augments the therapeutic effect of an HSV-based oncolytic virotherapy. J Immunother Cancer. 2021 07; 9(7).
journal title abbreviation: J Immunother Cancer
publication date: 2021-07-01T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

Functional and structural characterization of Hyp730, a highly conserved and dormancy-specific hypothetical membrane protein.
PubMed Identifier: 33650800
author list: Fannin S, Rangel J, Bodurin AP, Yu T, Mistretta B, Mali S, Gunaratne P, Bark SJ, Ebalunode JO, Khan A, Widger WR, Sen M
published in: MicrobiologyOpen
information resource reference: Functional and structural characterization of Hyp730, a highly conserved and dormancy-specific hypothetical membrane protein. Microbiologyopen. 2021 01; 10(1):e1154.
journal title abbreviation: Microbiologyopen
publication date: 2021-01-01T00:00:00
year: 2021
type: Academic Article
type: Article
type: Document
type: Information Resource

https://profilesrns.times.uh.edu/profile/250887
PubMed Identifier: 33092312
author list: Ju Z, Bhardwaj A, Embury MD, Singh H, Gunaratne PH, Bedrosian I, Wang J
published in: Cancers
information resource reference: Erratum: Ju, Z., et al. Integrative Analyses of Multilevel Omics Reveal Preneoplastic Breast to Possess a Molecular Landscape That Is Globally Shared with Invasive Basal-Like Breast Cancer (Running Title: Molecular Landscape of Basal-Like Breast Cancer Progression). Cancers 2020, 12, 722. Cancers (Basel). 2020 Oct 20; 12(10).
journal title abbreviation: Cancers (Basel)
publication date: 2020-10-20T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource
label: Erratum: Ju, Z., et al. Integrative Analyses of Multilevel Omics Reveal Preneoplastic Breast to Possess a Molecular Landscape That Is Globally Shared with Invasive Basal-Like Breast Cancer (Running Title: Molecular Landscape of Basal-Like Breast Cancer Progression). Cancers 2020, 12, 722.

Pan-cancer analysis reveals TAp63-regulated oncogenic lncRNAs that promote cancer progression through AKT activation.
PubMed Identifier: 33056990
author list: Napoli M, Li X, Ackerman HD, Deshpande AA, Barannikov I, Pisegna MA, Bedrosian I, Mitsch J, Quinlan P, Thompson A, Rajapakshe K, Coarfa C, Gunaratne PH, Marchion DC, Magliocco AM, Tsai KY, Flores ER
published in: Nature communications
information resource reference: Pan-cancer analysis reveals TAp63-regulated oncogenic lncRNAs that promote cancer progression through AKT activation. Nat Commun. 2020 10 14; 11(1):5156.
journal title abbreviation: Nat Commun
publication date: 2020-10-14T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Role of microRNA 690 in Mediating Angiotensin II Effects on Inflammation and Endoplasmic Reticulum Stress.
PubMed Identifier: 32466437
author list: Menikdiwela KR, Ramalingam L, Abbas MM, Bensmail H, Scoggin S, Kalupahana NS, Palat A, Gunaratne P, Moustaid-Moussa N
published in: Cells
information resource reference: Role of microRNA 690 in Mediating Angiotensin II Effects on Inflammation and Endoplasmic Reticulum Stress. Cells. 2020 05 26; 9(6).
journal title abbreviation: Cells
publication date: 2020-05-26T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing.
PubMed Identifier: 32271902
author list: Smith SL, Kennedy PR, Stacey KB, Worboys JD, Yarwood A, Seo S, Solloa EH, Mistretta B, Chatterjee SS, Gunaratne P, Allette K, Wang YC, Smith ML, Sebra R, Mace EM, Horowitz A, Thomson W, Martin P, Eyre S, Davis DM
published in: Blood advances
information resource reference: Diversity of peripheral blood human NK cells identified by single-cell RNA sequencing. Blood Adv. 2020 04 14; 4(7):1388-1406.
journal title abbreviation: Blood Adv
publication date: 2020-04-14T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

Wnt signaling regulates neural plate patterning in distinct temporal phases with dynamic transcriptional outputs.
PubMed Identifier: 32243887
author list: Green DG, Whitener AE, Mohanty S, Mistretta B, Gunaratne P, Yeh AT, Lekven AC
published in: Developmental biology
information resource reference: Wnt signaling regulates neural plate patterning in distinct temporal phases with dynamic transcriptional outputs. Dev Biol. 2020 06 15; 462(2):152-164.
journal title abbreviation: Dev Biol
publication date: 2020-03-31T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

https://profilesrns.times.uh.edu/profile/250892
PubMed Identifier: 32204397
author list: Ju Z, Bhardwaj A, Embury MD, Singh H, Gunaratne PH, Bedrosian I, Wang J
published in: Cancers
information resource reference: Integrative Analyses of Multilevel Omics Reveal Preneoplastic Breast to Possess a Molecular Landscape That is Globally Shared with Invasive Basal-Like Breast Cancer (Running Title: Molecular Landscape of Basal-Like Breast Cancer Progression). Cancers (Basel). 2020 Mar 19; 12(3).
journal title abbreviation: Cancers (Basel)
publication date: 2020-03-19T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource
label: Integrative Analyses of Multilevel Omics Reveal Preneoplastic Breast to Possess a Molecular Landscape That is Globally Shared with Invasive Basal-Like Breast Cancer (Running Title: Molecular Landscape of Basal-Like Breast Cancer Progression).

TAp63-Regulated miRNAs Suppress Cutaneous Squamous Cell Carcinoma through Inhibition of a Network of Cell-Cycle Genes.
PubMed Identifier: 32156775
author list: Davis AJ, Tsinkevich M, Rodencal J, Abbas HA, Su XH, Gi YJ, Fang B, Rajapakshe K, Coarfa C, Gunaratne PH, Koomen JM, Tsai KY, Flores ER
published in: Cancer research
information resource reference: TAp63-Regulated miRNAs Suppress Cutaneous Squamous Cell Carcinoma through Inhibition of a Network of Cell-Cycle Genes. Cancer Res. 2020 06 15; 80(12):2484-2497.
journal title abbreviation: Cancer Res
publication date: 2020-03-10T00:00:00
year: 2020
type: Academic Article
type: Article
type: Document
type: Information Resource

MicroRNA-509-3p inhibits cellular migration, invasion, and proliferation, and sensitizes osteosarcoma to cisplatin.
PubMed Identifier: 31836741
author list: Patil SL, Palat A, Pan Y, Rajapakshe K, Mirchandani R, Bondesson M, Yustein JT, Coarfa C, Gunaratne PH
published in: Scientific reports
information resource reference: MicroRNA-509-3p inhibits cellular migration, invasion, and proliferation, and sensitizes osteosarcoma to cisplatin. Sci Rep. 2019 12 13; 9(1):19089.
journal title abbreviation: Sci Rep
publication date: 2019-12-13T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Conversion of human cardiac progenitor cells into cardiac pacemaker-like cells.
PubMed Identifier: 31678351
author list: Raghunathan S, Islas JF, Mistretta B, Iyer D, Shi L, Gunaratne PH, Ko G, Schwartz RJ, McConnell BK
published in: Journal of molecular and cellular cardiology
information resource reference: Conversion of human cardiac progenitor cells into cardiac pacemaker-like cells. J Mol Cell Cardiol. 2020 01; 138:12-22.
journal title abbreviation: J Mol Cell Cardiol
publication date: 2019-10-31T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

A Universal Stress Protein That Controls Bacterial Stress Survival in Micrococcus luteus.
PubMed Identifier: 31548273
author list: Havis S, Bodunrin A, Rangel J, Zimmerer R, Murphy J, Storey JD, Duong TD, Mistretta B, Gunaratne P, Widger WR, Bark SJ
published in: Journal of bacteriology
information resource reference: A Universal Stress Protein That Controls Bacterial Stress Survival in Micrococcus luteus. J Bacteriol. 2019 12 15; 201(24).
journal title abbreviation: J Bacteriol
publication date: 2019-11-20T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Recent Developments and Therapeutic Strategies against Hepatocellular Carcinoma.
PubMed Identifier: 31481419
author list: Yarchoan M, Agarwal P, Villanueva A, Rao S, Dawson LA, Llovet JM, Finn RS, Groopman JD, El-Serag HB, Monga SP, Wang XW, Karin M, Schwartz RE, Tanabe KK, Roberts LR, Gunaratne PH, Tsung A, Brown KA, Lawrence TS, Salem R, Singal AG, Kim AK, Rabiee A, Resar L, Hoshida Y, He AR, Ghoshal K, Ryan PB, Jaffee EM, Guha C, Mishra L, Coleman CN, Ahmed MM
published in: Cancer research
information resource reference: Recent Developments and Therapeutic Strategies against Hepatocellular Carcinoma. Cancer Res. 2019 Sep 01; 79(17):4326-4330.
journal title abbreviation: Cancer Res
publication date: 2019-09-01T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Oncogenic lncRNA downregulates cancer cell antigen presentation and intrinsic tumor suppression.
PubMed Identifier: 31160797
author list: Hu Q, Ye Y, Chan LC, Li Y, Liang K, Lin A, Egranov SD, Zhang Y, Xia W, Gong J, Pan Y, Chatterjee SS, Yao J, Evans KW, Nguyen TK, Park PK, Liu J, Coarfa C, Donepudi SR, Putluri V, Putluri N, Sreekumar A, Ambati CR, Hawke DH, Marks JR, Gunaratne PH, Caudle AS, Sahin AA, Hortobagyi GN, Meric-Bernstam F, Chen L, Yu D, Hung MC, Curran MA, Han L, Lin C, Yang L
published in: Nature immunology
information resource reference: Oncogenic lncRNA downregulates cancer cell antigen presentation and intrinsic tumor suppression. Nat Immunol. 2019 07; 20(7):835-851.
journal title abbreviation: Nat Immunol
publication date: 2019-06-03T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure.
PubMed Identifier: 31083348
author list: Moreno-Villanueva M, Zhang Y, Feiveson A, Mistretta B, Pan Y, Chatterjee S, Wu W, Clanton R, Nelman-Gonzalez M, Krieger S, Gunaratne P, Crucian B, Wu H
published in: International journal of molecular sciences
information resource reference: Single-Cell RNA-Sequencing Identifies Activation of TP53 and STAT1 Pathways in Human T Lymphocyte Subpopulations in Response to Ex Vivo Radiation Exposure. Int J Mol Sci. 2019 May 10; 20(9).
journal title abbreviation: Int J Mol Sci
publication date: 2019-05-10T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

Activating p53 family member TAp63: A novel therapeutic strategy for targeting p53-altered tumors.
PubMed Identifier: 31012964
author list: Gunaratne PH, Pan Y, Rao AK, Lin C, Hernandez-Herrera A, Liang K, Rait AS, Venkatanarayan A, Benham AL, Rubab F, Kim SS, Rajapakshe K, Chan CK, Mangala LS, Lopez-Berestein G, Sood AK, Rowat AC, Coarfa C, Pirollo KF, Flores ER, Chang EH
published in: Cancer
information resource reference: Activating p53 family member TAp63: A novel therapeutic strategy for targeting p53-altered tumors. Cancer. 2019 07 15; 125(14):2409-2422.
journal title abbreviation: Cancer
publication date: 2019-04-23T00:00:00
year: 2019
type: Academic Article
type: Article
type: Document
type: Information Resource

The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders.
PubMed Identifier: 30545964
author list: Chen C, Meng Q, Xia Y, Ding C, Wang L, Dai R, Cheng L, Gunaratne P, Gibbs RA, Min S, Coarfa C, Reid JG, Zhang C, Jiao C, Jiang Y, Giase G, Thomas A, Fitzgerald D, Brunetti T, Shieh A, Xia C, Wang Y, Wang Y, Badner JA, Gershon ES, White KP, Liu C
published in: Science translational medicine
information resource reference: The transcription factor POU3F2 regulates a gene coexpression network in brain tissue from patients with psychiatric disorders. Sci Transl Med. 2018 12 19; 10(472).
journal title abbreviation: Sci Transl Med
publication date: 2018-12-13T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Quaternary Ammonium-Terminated Films Formed from Mixed Bidentate Adsorbates Provide a High-Capacity Platform for Oligonucleotide Delivery.
PubMed Identifier: 30335936
author list: Hoang J, Park CS, Lee HJ, Marquez MD, Zenasni O, Gunaratne PH, Lee TR
published in: ACS applied materials & interfaces
information resource reference: Quaternary Ammonium-Terminated Films Formed from Mixed Bidentate Adsorbates Provide a High-Capacity Platform for Oligonucleotide Delivery. ACS Appl Mater Interfaces. 2018 Nov 28; 10(47):40890-40900.
journal title abbreviation: ACS Appl Mater Interfaces
publication date: 2018-11-13T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Transcriptomic and microRNA analyses of gene networks regulated by eicosapentaenoic acid in brown adipose tissue of diet-induced obese mice.
PubMed Identifier: 30261280
author list: Pahlavani M, Wijayatunga NN, Kalupahana NS, Ramalingam L, Gunaratne PH, Coarfa C, Rajapakshe K, Kottapalli P, Moustaid-Moussa N
published in: Biochimica et biophysica acta. Molecular and cell biology of lipids
information resource reference: Transcriptomic and microRNA analyses of gene networks regulated by eicosapentaenoic acid in brown adipose tissue of diet-induced obese mice. Biochim Biophys Acta Mol Cell Biol Lipids. 2018 12; 1863(12):1523-1531.
journal title abbreviation: Biochim Biophys Acta Mol Cell Biol Lipids
publication date: 2018-09-25T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

CD56 Expression Marks Human Group 2 Innate Lymphoid Cell Divergence from a Shared NK Cell and Group 3 Innate Lymphoid Cell Developmental Pathway.
PubMed Identifier: 30193847
author list: Chen L, Youssef Y, Robinson C, Ernst GF, Carson MY, Young KA, Scoville SD, Zhang X, Harris R, Sekhri P, Mansour AG, Chan WK, Nalin AP, Mao HC, Hughes T, Mace EM, Pan Y, Rustagi N, Chatterjee SS, Gunaratne PH, Behbehani GK, Mundy-Bosse BL, Caligiuri MA, Freud AG
published in: Immunity
information resource reference: CD56 Expression Marks Human Group 2 Innate Lymphoid Cell Divergence from a Shared NK Cell and Group 3 Innate Lymphoid Cell Developmental Pathway. Immunity. 2018 09 18; 49(3):464-476.e4.
journal title abbreviation: Immunity
publication date: 2018-09-04T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers.
PubMed Identifier: 29622464
author list: Berger AC, Korkut A, Kanchi RS, Hegde AM, Lenoir W, Liu W, Liu Y, Fan H, Shen H, Ravikumar V, Rao A, Schultz A, Li X, Sumazin P, Williams C, Mestdagh P, Gunaratne PH, Yau C, Bowlby R, Robertson AG, Tiezzi DG, Wang C, Cherniack AD, Godwin AK, Kuderer NM, Rader JS, Zuna RE, Sood AK, Lazar AJ, Ojesina AI, Adebamowo C, Adebamowo SN, Baggerly KA, Chen TW, Chiu HS, Lefever S, Liu L, MacKenzie K, Orsulic S, Roszik J, Shelley CS, Song Q, Vellano CP, Wentzensen N, Cancer Genome Atlas Research Network, Weinstein JN, Mills GB, Levine DA, Akbani R
published in: Cancer cell
information resource reference: A Comprehensive Pan-Cancer Molecular Study of Gynecologic and Breast Cancers. Cancer Cell. 2018 04 09; 33(4):690-705.e9.
journal title abbreviation: Cancer Cell
publication date: 2018-04-02T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context.
PubMed Identifier: 29617668
author list: Chiu HS, Somvanshi S, Patel E, Chen TW, Singh VP, Zorman B, Patil SL, Pan Y, Chatterjee SS, Cancer Genome Atlas Research Network, Sood AK, Gunaratne PH, Sumazin P
published in: Cell reports
information resource reference: Pan-Cancer Analysis of lncRNA Regulation Supports Their Targeting of Cancer Genes in Each Tumor Context. Cell Rep. 2018 04 03; 23(1):297-312.e12.
journal title abbreviation: Cell Rep
publication date: 2018-04-03T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas.
PubMed Identifier: 29617660
author list: Campbell JD, Yau C, Bowlby R, Liu Y, Brennan K, Fan H, Taylor AM, Wang C, Walter V, Akbani R, Byers LA, Creighton CJ, Coarfa C, Shih J, Cherniack AD, Gevaert O, Prunello M, Shen H, Anur P, Chen J, Cheng H, Hayes DN, Bullman S, Pedamallu CS, Ojesina AI, Sadeghi S, Mungall KL, Robertson AG, Benz C, Schultz A, Kanchi RS, Gay CM, Hegde A, Diao L, Wang J, Ma W, Sumazin P, Chiu HS, Chen TW, Gunaratne P, Donehower L, Rader JS, Zuna R, Al-Ahmadie H, Lazar AJ, Flores ER, Tsai KY, Zhou JH, Rustgi AK, Drill E, Shen R, Wong CK, Cancer Genome Atlas Research Network, Stuart JM, Laird PW, Hoadley KA, Weinstein JN, Peto M, Pickering CR, Chen Z, Van Waes C
published in: Cell reports
information resource reference: Genomic, Pathway Network, and Immunologic Features Distinguishing Squamous Carcinomas. Cell Rep. 2018 04 03; 23(1):194-212.e6.
journal title abbreviation: Cell Rep
publication date: 2018-04-03T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

An integrative transcriptomic approach to identify depot differences in genes and microRNAs in adipose tissues from high fat fed mice.
PubMed Identifier: 29507687
author list: Wijayatunga NN, Pahlavani M, Kalupahana NS, Kottapalli KR, Gunaratne PH, Coarfa C, Ramalingam L, Moustaid-Moussa N
published in: Oncotarget
information resource reference: An integrative transcriptomic approach to identify depot differences in genes and microRNAs in adipose tissues from high fat fed mice. Oncotarget. 2018 Feb 06; 9(10):9246-9261.
journal title abbreviation: Oncotarget
publication date: 2018-01-13T00:00:00
year: 2018
type: Academic Article
type: Article
type: Document
type: Information Resource

Distinct TP63 Isoform-Driven Transcriptional Signatures Predict Tumor Progression and Clinical Outcomes.
PubMed Identifier: 29180475
author list: Abbas HA, Bui NHB, Rajapakshe K, Wong J, Gunaratne P, Tsai KY, Coarfa C, Flores ER
published in: Cancer research
information resource reference: Distinct TP63 Isoform-Driven Transcriptional Signatures Predict Tumor Progression and Clinical Outcomes. Cancer Res. 2018 01 15; 78(2):451-462.
journal title abbreviation: Cancer Res
publication date: 2017-11-27T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Ronin Governs Early Heart Development by Controlling Core Gene Expression Programs.
PubMed Identifier: 29117561
author list: Fujita J, Freire P, Coarfa C, Benham AL, Gunaratne P, Schneider MD, Dejosez M, Zwaka TP
published in: Cell reports
information resource reference: Ronin Governs Early Heart Development by Controlling Core Gene Expression Programs. Cell Rep. 2017 Nov 07; 21(6):1562-1573.
journal title abbreviation: Cell Rep
publication date: 2017-11-07T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Protective properties of n-3 fatty acids and implications in obesity-associated breast cancer.
PubMed Identifier: 29096149
author list: Al-Jawadi A, Moussa H, Ramalingam L, Dharmawardhane S, Gollahon L, Gunaratne P, Layeequr Rahman R, Moustaid-Moussa N
published in: The Journal of nutritional biochemistry
information resource reference: Protective properties of n-3 fatty acids and implications in obesity-associated breast cancer. J Nutr Biochem. 2018 Mar; 53:1-8.
journal title abbreviation: J Nutr Biochem
publication date: 2017-10-04T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

DNA Loading and Release Using Custom-Tailored Poly(l-lysine) Surfaces.
PubMed Identifier: 28636320
author list: Shakiba A, Patil SL, Zenasni O, Schmitt ME, Gunaratne PH, Lee TR
published in: ACS applied materials & interfaces
information resource reference: DNA Loading and Release Using Custom-Tailored Poly(l-lysine) Surfaces. ACS Appl Mater Interfaces. 2017 Jul 19; 9(28):23370-23378.
journal title abbreviation: ACS Appl Mater Interfaces
publication date: 2017-07-10T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Regulation of miRNA-29c and its downstream pathways in preneoplastic progression of triple-negative breast cancer.
PubMed Identifier: 28160548
author list: Bhardwaj A, Singh H, Rajapakshe K, Tachibana K, Ganesan N, Pan Y, Gunaratne PH, Coarfa C, Bedrosian I
published in: Oncotarget
information resource reference: Regulation of miRNA-29c and its downstream pathways in preneoplastic progression of triple-negative breast cancer. Oncotarget. 2017 Mar 21; 8(12):19645-19660.
journal title abbreviation: Oncotarget
publication date: 2017-03-21T00:00:00
year: 2017
type: Academic Article
type: Article
type: Document
type: Information Resource

Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour.
PubMed Identifier: 27906134
author list: Chan CK, Pan Y, Nyberg K, Marra MA, Lim EL, Jones SJ, Maar D, Gibb EA, Gunaratne PH, Robertson AG, Rowat AC
published in: Open biology
information resource reference: Tumour-suppressor microRNAs regulate ovarian cancer cell physical properties and invasive behaviour. Open Biol. 2016 11; 6(11).
journal title abbreviation: Open Biol
publication date: 2016-11-01T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates.
PubMed Identifier: 27574101
author list: Chitsazzadeh V, Coarfa C, Drummond JA, Nguyen T, Joseph A, Chilukuri S, Charpiot E, Adelmann CH, Ching G, Nguyen TN, Nicholas C, Thomas VD, Migden M, MacFarlane D, Thompson E, Shen J, Takata Y, McNiece K, Polansky MA, Abbas HA, Rajapakshe K, Gower A, Spira A, Covington KR, Xiao W, Gunaratne P, Pickering C, Frederick M, Myers JN, Shen L, Yao H, Su X, Rapini RP, Wheeler DA, Hawk ET, Flores ER, Tsai KY
published in: Nature communications
information resource reference: Cross-species identification of genomic drivers of squamous cell carcinoma development across preneoplastic intermediates. Nat Commun. 2016 08 30; 7:12601.
journal title abbreviation: Nat Commun
publication date: 2016-08-30T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Mesp1 Marked Cardiac Progenitor Cells Repair Infarcted Mouse Hearts.
PubMed Identifier: 27538477
author list: Liu Y, Chen L, Diaz AD, Benham A, Xu X, Wijaya CS, Fa'ak F, Luo W, Soibam B, Azares A, Yu W, Lyu Q, Stewart MD, Gunaratne P, Cooney A, McConnell BK, Schwartz RJ
published in: Scientific reports
information resource reference: Mesp1 Marked Cardiac Progenitor Cells Repair Infarcted Mouse Hearts. Sci Rep. 2016 08 19; 6:31457.
journal title abbreviation: Sci Rep
publication date: 2016-08-19T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

PPAR? agonists promote differentiation of cancer stem cells by restraining YAP transcriptional activity.
PubMed Identifier: 27528232
author list: Basu-Roy U, Han E, Rattanakorn K, Gadi A, Verma N, Maurizi G, Gunaratne PH, Coarfa C, Kennedy OD, Garabedian MJ, Basilico C, Mansukhani A
published in: Oncotarget
information resource reference: PPAR? agonists promote differentiation of cancer stem cells by restraining YAP transcriptional activity. Oncotarget. 2016 Sep 20; 7(38):60954-60970.
journal title abbreviation: Oncotarget
publication date: 2016-09-20T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

miR-322/-503 cluster is expressed in the earliest cardiac progenitor cells and drives cardiomyocyte specification.
PubMed Identifier: 27512039
author list: Shen X, Soibam B, Benham A, Xu X, Chopra M, Peng X, Yu W, Bao W, Liang R, Azares A, Liu P, Gunaratne PH, Mercola M, Cooney AJ, Schwartz RJ, Liu Y
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: miR-322/-503 cluster is expressed in the earliest cardiac progenitor cells and drives cardiomyocyte specification. Proc Natl Acad Sci U S A. 2016 08 23; 113(34):9551-6.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2016-08-10T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

?Np63/DGCR8-Dependent MicroRNAs Mediate Therapeutic Efficacy of HDAC Inhibitors in Cancer.
PubMed Identifier: 27300436
author list: Napoli M, Venkatanarayan A, Raulji P, Meyers BA, Norton W, Mangala LS, Sood AK, Rodriguez-Aguayo C, Lopez-Berestein G, Vin H, Duvic M, Tetzlaff MB, Curry JL, Rook AH, Abbas HA, Coarfa C, Gunaratne PH, Tsai KY, Flores ER
published in: Cancer cell
information resource reference: ?Np63/DGCR8-Dependent MicroRNAs Mediate Therapeutic Efficacy of HDAC Inhibitors in Cancer. Cancer Cell. 2016 06 13; 29(6):874-888.
journal title abbreviation: Cancer Cell
publication date: 2016-06-13T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

MYC-Driven Neuroblastomas Are Addicted to a Telomerase-Independent Function of Dyskerin.
PubMed Identifier: 27197171
author list: O'Brien R, Tran SL, Maritz MF, Liu B, Kong CF, Purgato S, Yang C, Murray J, Russell AJ, Flemming CL, von Jonquieres G, Pickett HA, London WB, Haber M, Gunaratne PH, Norris MD, Perini G, Fletcher JI, MacKenzie KL
published in: Cancer research
information resource reference: MYC-Driven Neuroblastomas Are Addicted to a Telomerase-Independent Function of Dyskerin. Cancer Res. 2016 Jun 15; 76(12):3604-17.
journal title abbreviation: Cancer Res
publication date: 2016-04-13T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer.
PubMed Identifier: 27036018
author list: Pan Y, Robertson G, Pedersen L, Lim E, Hernandez-Herrera A, Rowat AC, Patil SL, Chan CK, Wen Y, Zhang X, Basu-Roy U, Mansukhani A, Chu A, Sipahimalani P, Bowlby R, Brooks D, Thiessen N, Coarfa C, Ma Y, Moore RA, Schein JE, Mungall AJ, Liu J, Pecot CV, Sood AK, Jones SJ, Marra MA, Gunaratne PH
published in: Oncotarget
information resource reference: miR-509-3p is clinically significant and strongly attenuates cellular migration and multi-cellular spheroids in ovarian cancer. Oncotarget. 2016 May 03; 7(18):25930-48.
journal title abbreviation: Oncotarget
publication date: 2016-05-03T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Transmembrane adaptor protein PAG1 is a novel tumor suppressor in neuroblastoma.
PubMed Identifier: 26993602
author list: Agarwal S, Ghosh R, Chen Z, Lakoma A, Gunaratne PH, Kim ES, Shohet JM
published in: Oncotarget
information resource reference: Transmembrane adaptor protein PAG1 is a novel tumor suppressor in neuroblastoma. Oncotarget. 2016 Apr 26; 7(17):24018-26.
journal title abbreviation: Oncotarget
publication date: 2016-04-26T00:00:00
year: 2016
type: Academic Article
type: Article
type: Document
type: Information Resource

Identification of potential glucocorticoid receptor therapeutic targets in multiple myeloma.
PubMed Identifier: 26715915
author list: Thomas AL, Coarfa C, Qian J, Wilkerson JJ, Rajapakshe K, Krett NL, Gunaratne PH, Rosen ST
published in: Nuclear receptor signaling
information resource reference: Identification of potential glucocorticoid receptor therapeutic targets in multiple myeloma. Nucl Recept Signal. 2015; 13:e006.
journal title abbreviation: Nucl Recept Signal
publication date: 2015-12-22T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1.
PubMed Identifier: 26548531
author list: Liu C, Lou CH, Shah V, Ritter R, Talley J, Soibam B, Benham A, Zhu H, Perez E, Shieh YE, Gunaratne PH, Sater AK
published in: Developmental biology
information resource reference: Identification of microRNAs and microRNA targets in Xenopus gastrulae: The role of miR-26 in the regulation of Smad1. Dev Biol. 2016 Jan 01; 409(1):26-38.
journal title abbreviation: Dev Biol
publication date: 2015-11-06T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer.
PubMed Identifier: 26426411
author list: Jonsson P, Coarfa C, Mesmar F, Raz T, Rajapakshe K, Thompson JF, Gunaratne PH, Williams C
published in: Molecular endocrinology (Baltimore, Md.)
information resource reference: Single-Molecule Sequencing Reveals Estrogen-Regulated Clinically Relevant lncRNAs in Breast Cancer. Mol Endocrinol. 2015 Nov; 29(11):1634-45.
journal title abbreviation: Mol Endocrinol
publication date: 2015-10-01T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

Annexin A1 Preferentially Predicts Poor Prognosis of Basal-Like Breast Cancer Patients by Activating mTOR-S6 Signaling.
PubMed Identifier: 26000884
author list: Bhardwaj A, Ganesan N, Tachibana K, Rajapakshe K, Albarracin CT, Gunaratne PH, Coarfa C, Bedrosian I
published in: PloS one
information resource reference: Annexin A1 Preferentially Predicts Poor Prognosis of Basal-Like Breast Cancer Patients by Activating mTOR-S6 Signaling. PLoS One. 2015; 10(5):e0127678.
journal title abbreviation: PLoS One
publication date: 2015-05-22T00:00:00
year: 2015
type: Academic Article
type: Article
type: Document
type: Information Resource

IAPP-driven metabolic reprogramming induces regression of p53-deficient tumours in vivo.
PubMed Identifier: 25409149
author list: Venkatanarayan A, Raulji P, Norton W, Chakravarti D, Coarfa C, Su X, Sandur SK, Ramirez MS, Lee J, Kingsley CV, Sananikone EF, Rajapakshe K, Naff K, Parker-Thornburg J, Bankson JA, Tsai KY, Gunaratne PH, Flores ER
published in: Nature
information resource reference: IAPP-driven metabolic reprogramming induces regression of p53-deficient tumours in vivo. Nature. 2015 Jan 29; 517(7536):626-30.
journal title abbreviation: Nature
publication date: 2014-11-17T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster.
PubMed Identifier: 25368194
author list: Menon DU, Coarfa C, Xiao W, Gunaratne PH, Meller VH
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: siRNAs from an X-linked satellite repeat promote X-chromosome recognition in Drosophila melanogaster. Proc Natl Acad Sci U S A. 2014 Nov 18; 111(46):16460-5.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2014-11-03T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Functional analysis of miR-34c as a putative tumor suppressor in high-grade serous ovarian cancer.
PubMed Identifier: 25273528
author list: Yu Z, Kim J, He L, Creighton CJ, Gunaratne PH, Hawkins SM, Matzuk MM
published in: Biology of reproduction
information resource reference: Functional analysis of miR-34c as a putative tumor suppressor in high-grade serous ovarian cancer. Biol Reprod. 2014 Nov; 91(5):113.
journal title abbreviation: Biol Reprod
publication date: 2014-10-01T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

The somatic genomic landscape of chromophobe renal cell carcinoma.
PubMed Identifier: 25155756
author list: Davis CF, Ricketts CJ, Wang M, Yang L, Cherniack AD, Shen H, Buhay C, Kang H, Kim SC, Fahey CC, Hacker KE, Bhanot G, Gordenin DA, Chu A, Gunaratne PH, Biehl M, Seth S, Kaipparettu BA, Bristow CA, Donehower LA, Wallen EM, Smith AB, Tickoo SK, Tamboli P, Reuter V, Schmidt LS, Hsieh JJ, Choueiri TK, Hakimi AA, The?Cancer Genome Atlas Research Network, Chin L, Meyerson M, Kucherlapati R, Park WY, Robertson AG, Laird PW, Henske EP, Kwiatkowski DJ, Park PJ, Morgan M, Shuch B, Muzny D, Wheeler DA, Linehan WM, Gibbs RA, Rathmell WK, Creighton CJ
published in: Cancer cell
information resource reference: The somatic genomic landscape of chromophobe renal cell carcinoma. Cancer Cell. 2014 Sep 08; 26(3):319-330.
journal title abbreviation: Cancer Cell
publication date: 2014-08-21T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Identification of p38? as a therapeutic target for the treatment of S?zary syndrome.
PubMed Identifier: 25148579
author list: Bliss-Moreau M, Coarfa C, Gunaratne PH, Guitart J, Krett NL, Rosen ST
published in: The Journal of investigative dermatology
information resource reference: Identification of p38? as a therapeutic target for the treatment of S?zary syndrome. J Invest Dermatol. 2015 Feb; 135(2):599-608.
journal title abbreviation: J Invest Dermatol
publication date: 2014-08-22T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease.
PubMed Identifier: 25049417
author list: Boele J, Persson H, Shin JW, Ishizu Y, Newie IS, S?kilde R, Hawkins SM, Coarfa C, Ikeda K, Takayama K, Horie-Inoue K, Ando Y, Burroughs AM, Sasaki C, Suzuki C, Sakai M, Aoki S, Ogawa A, Hasegawa A, Lizio M, Kaida K, Teusink B, Carninci P, Suzuki H, Inoue S, Gunaratne PH, Rovira C, Hayashizaki Y, de Hoon MJ
published in: Proceedings of the National Academy of Sciences of the United States of America
information resource reference: PAPD5-mediated 3' adenylation and subsequent degradation of miR-21 is disrupted in proliferative disease. Proc Natl Acad Sci U S A. 2014 Aug 05; 111(31):11467-72.
journal title abbreviation: Proc Natl Acad Sci U S A
publication date: 2014-07-21T00:00:00
year: 2014
type: Academic Article
type: Article
type: Document
type: Information Resource

Large conserved domains of low DNA methylation maintained by Dnmt3a.
PubMed Identifier: 24270360
author list: Jeong M, Sun D, Luo M, Huang Y, Challen GA, Rodriguez B, Zhang X, Chavez L, Wang H, Hannah R, Kim SB, Yang L, Ko M, Chen R, G?ttgens B, Lee JS, Gunaratne P, Godley LA, Darlington GJ, Rao A, Li W, Goodell MA
published in: Nature genetics
information resource reference: Large conserved domains of low DNA methylation maintained by Dnmt3a. Nat Genet. 2014 Jan; 46(1):17-23.
journal title abbreviation: Nat Genet
publication date: 2013-11-24T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

Chromatin changes in dicer-deficient mouse embryonic stem cells in response to retinoic acid induced differentiation.
PubMed Identifier: 24040281
author list: Tennakoon JB, Wang H, Coarfa C, Cooney AJ, Gunaratne PH
published in: PloS one
information resource reference: Chromatin changes in dicer-deficient mouse embryonic stem cells in response to retinoic acid induced differentiation. PLoS One. 2013; 8(9):e74556.
journal title abbreviation: PLoS One
publication date: 2013-09-09T00:00:00
year: 2013
type: Academic Article
type: Article
type: Document
type: Information Resource

A gold nanoparticle platform for the delivery of functional microRNAs into cancer cells.
PubMed Identifier: 23111335
author list: Ghosh R, Singh LC, Shohet JM, Gunaratne PH
published in: Biomaterials
information resource reference: A gold nanoparticle platform for the delivery of functional microRNAs into cancer cells. Biomaterials. 2013 Jan; 34(3):807-16.
journal title abbreviation: Biomaterials
publication date: 2012-10-27T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

miRNA data analysis: next-gen sequencing.
PubMed Identifier: 22144206
author list: Gunaratne PH, Coarfa C, Soibam B, Tandon A
published in: Methods in molecular biology (Clifton, N.J.)
information resource reference: miRNA data analysis: next-gen sequencing. Methods Mol Biol. 2012; 822:273-88.
journal title abbreviation: Methods Mol Biol
publication date: 2012-01-01T00:00:00
year: 2012
type: Academic Article
type: Article
type: Document
type: Information Resource

miRNA regulatory circuits in ES cells differentiation: a chemical kinetics modeling approach.
PubMed Identifier: 22039400
author list: Luo Z, Xu X, Gu P, Lonard D, Gunaratne PH, Cooney AJ, Azencott R
published in: PloS one
information resource reference: miRNA regulatory circuits in ES cells differentiation: a chemical kinetics modeling approach. PLoS One. 2011; 6(10):e23263.
journal title abbreviation: PLoS One
publication date: 2011-10-19T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain.
PubMed Identifier: 21627805
author list: Gunaratne PH, Lin YC, Benham AL, Drnevich J, Coarfa C, Tennakoon JB, Creighton CJ, Kim JH, Milosavljevic A, Watson M, Griffiths-Jones S, Clayton DF
published in: BMC genomics
information resource reference: Song exposure regulates known and novel microRNAs in the zebra finch auditory forebrain. BMC Genomics. 2011 May 31; 12(1):277.
journal title abbreviation: BMC Genomics
publication date: 2011-05-31T00:00:00
year: 2011
type: Academic Article
type: Article
type: Document
type: Information Resource

Using effective subnetworks to predict selected properties of gene networks.
PubMed Identifier: 20949025
author list: Gunaratne GH, Gunaratne PH, Seemann L, T?r?k A
published in: PloS one
information resource reference: Using effective subnetworks to predict selected properties of gene networks. PLoS One. 2010 Oct 08; 5(10):e13080.
journal title abbreviation: PLoS One
publication date: 2010-10-08T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Large-scale integration of MicroRNA and gene expression data for identification of enriched microRNA-mRNA associations in biological systems.
PubMed Identifier: 20827542
author list: Gunaratne PH, Creighton CJ, Watson M, Tennakoon JB
published in: Methods in molecular biology (Clifton, N.J.)
information resource reference: Large-scale integration of MicroRNA and gene expression data for identification of enriched microRNA-mRNA associations in biological systems. Methods Mol Biol. 2010; 667:297-315.
journal title abbreviation: Methods Mol Biol
publication date: 2010-01-01T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

A theory for the arrangement of sensory organs in Drosophila.
PubMed Identifier: 20370287
author list: Zhu H, Gunaratne PH, Roman GW, Gunaratne GH
published in: Chaos (Woodbury, N.Y.)
information resource reference: A theory for the arrangement of sensory organs in Drosophila. Chaos. 2010 Mar; 20(1):013132.
journal title abbreviation: Chaos
publication date: 2010-03-01T00:00:00
year: 2010
type: Academic Article
type: Article
type: Document
type: Information Resource

Embryonic stem cell microRNAs: defining factors in induced pluripotent (iPS) and cancer (CSC) stem cells?
PubMed Identifier: 19492978
author list: Gunaratne PH
published in: Current stem cell research & therapy
information resource reference: Embryonic stem cell microRNAs: defining factors in induced pluripotent (iPS) and cancer (CSC) stem cells? Curr Stem Cell Res Ther. 2009 Sep; 4(3):168-77.
journal title abbreviation: Curr Stem Cell Res Ther
publication date: 2009-09-01T00:00:00
year: 2009
type: Academic Article
type: Article
type: Document
type: Information Resource

Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes.
PubMed Identifier: 18614752
author list: Reid JG, Nagaraja AK, Lynn FC, Drabek RB, Muzny DM, Shaw CA, Weiss MK, Naghavi AO, Khan M, Zhu H, Tennakoon J, Gunaratne GH, Corry DB, Miller J, McManus MT, German MS, Gibbs RA, Matzuk MM, Gunaratne PH
published in: Genome research
information resource reference: Mouse let-7 miRNA populations exhibit RNA editing that is constrained in the 5'-seed/ cleavage/anchor regions and stabilize predicted mmu-let-7a:mRNA duplexes. Genome Res. 2008 Oct; 18(10):1571-81.
journal title abbreviation: Genome Res
publication date: 2008-07-09T00:00:00
year: 2008
type: Academic Article
type: Article
type: Document
type: Information Resource

MicroRNAs
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MeSH semantic group name: Chemicals & Drugs
number of authors: 23
number of publications: 55
uniqueness weight: 0.939125
type: Concept

University of Houston
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Cell Movement
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MeSH semantic group name: Physiology
number of authors: 29
number of publications: 64
uniqueness weight: 0.949053
type: Concept

Associate Professor
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Ovarian Neoplasms
MeSH DescriptorUI: D010051
MeSH semantic group name: Disorders
number of authors: 8
number of publications: 13
uniqueness weight: 0.978913
type: Concept

Gene Expression Regulation, Neoplastic
MeSH DescriptorUI: D015972
MeSH semantic group name: Physiology
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number of publications: 55
uniqueness weight: 0.953046
type: Concept